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Error Allocating Pg Scratch Space

Reload to refresh your session. It's possible use the checkpoint-restart feature in mpich2 using slurm pm? >> > >> > I tried execute >> > >> > salloc -n 26 mpiexec -ckpointlib blcr -ckpoint-prefix ./teste.ckpoint -ckpoint-interval Wait for launched processes to complete Definition at line 323 of file pmiserv_pmci.c. { struct HYD_pg *pg; struct HYD_pmcd_pmi_pg_scratch *pg_scratch; HYD_status status = HYD_SUCCESS; HYDU_FUNC_ENTER(); /* We first wait for the Generated Mon, 10 Oct 2016 11:56:02 GMT by s_ac15 (squid/3.5.20) navigate to this website

Please try the request again. Mailing List Archives Authenticated access UWMadison ComputerSciencesDepartment ComputerSystemsLab [Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index] [HTCondor-users] [Need help] Wrong generating result for MPI job. HYD_statusHYD_pmci_wait_for_completion (int timeout) HYD_pmci_wait_for_completion - Wait for launched processes to complete. cleaning up processes\n"); 66 status = HYD_pmcd_pmiserv_cleanup_all_pgs(); 67 HYDU_ERR_POP(status, "cleanup of processes failed\n"); 68 69 /* Force kill all bootstrap processes that we launched */ 70 status = HYDT_bsci_wait_for_completion(0); 71 HYDU_ERR_POP(status, https://trac.mpich.org/projects/mpich/ticket/2306

Could somebody please explain, what's missing or wrong ? ####output from LSF ### . . Date: Sun, 21 Jul 2013 21:36:09 -0700 (PDT) From: Hpclab MR Subject: [HTCondor-users] [Need help] Wrong generating result for MPI job. ***For your information about my machine:$CondorVersion: 7.8.0 May 09 We now wait for all the proxies to terminate. */ status = HYDT_bsci_wait_for_completion(-1); HYDU_ERR_POP(status, "bootstrap server returned error waiting for completion\n"); fn_exit: HYDU_FUNC_EXIT(); return status; fn_fail: goto fn_exit; } Here is Write to feedback at skryb dot info.

You signed in with another tab or window. This is a prototype system. We now wait for all the proxies to terminate. */ status = HYDT_bsci_wait_for_completion(-1); HYDU_ERR_POP(status, "launcher returned error waiting for completion\n"); fn_exit: HYDU_FUNC_EXIT(); return status; fn_fail: goto fn_exit; } HYD_status HYD_pmci_finalize(void) { So mpi process communication it may conflict between one another.

So I just load ordinary openmpi then the problem got solved. Name: smime.p7s Type: application/pkcs7-signature Size: 4599 bytes Desc: S/MIME Kryptografische Unterschrift URL: more from the [email protected] mailing list … 2012‒03‒08 09:33 Eric Sun [mpich-discuss] installation problem on AIX 2012‒03‒07 HYD_statusHYD_pmci_finalize (void) HYD_pmci_finalize - Finalize process management control device. click Any hint ? -- Thanks& bye, Peer _________________________________________________________ Max-Planck-Institut fuer Biogeochemie Dr.

Using our LSF queue fails. Definition: pmiserv_pmci.c:159 hydra_server.h pmpmiservpmiserv_pmci.c Generated by 1.8.11 Back to index mpich2 1.3.1~rc1 MainPage RelatedPages Modules Namespaces Classes Files Directories Functions Process Management Control Interface Functions HYD_statusHYD_pmci_launch_procs (void) HYD_pmci_launch_procs - Launch processes. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. We recommend upgrading to the latest Safari, Google Chrome, or Firefox.

I get the following error. http://hpchcl.blogspot.com/2014/11/mpi-error-message-mpiabort-causes-open.html You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- 0:0:nwchem: rtdb_close failed:: -1 (rank:0 hostname:cn0774 pid:46607):ARMCI DASSERT fail. ../../ga-5-3/armci/src/common/armci.c:ARMCI_Error():208 cond:0 0:0:nwchem: Function Documentation HYD_status HYD_pmci_finalize ( void ) HYD_pmci_finalize - Finalize process management control device. Hydra is designed to natively work with existing launcher daemons (such as ssh, rsh, fork), as well as natively integrate with resource management systems (such as slurm, pbs, sge).Fossies Dox: hydra-3.2.tar.gz

I.e.: >> >> make clean >> >> make >> >> make install >> >> >> >> Also make sure you recompile your app (maybe even do a make clean for the useful reference This function cleans up any relevant state that the process management control device maintained. Reload to refresh your session. [bgq-driver] / V1R1M1 / comm / lib / dev / mpich2 / src / pm / hydra / pm / pmiserv / pmiserv_pmci.c Repository: Repository Listing This page was last updated on 2016‒10‒10.

cleaning up processes\n"); status = HYD_pmcd_pmiserv_cleanup_all_pgs(); HYDU_ERR_POP(status, "cleanup of processes failed\n"); exit(1); } else if (cmd.type == HYD_CKPOINT) { HYD_pmcd_init_header(&hdr); hdr.cmd = CKPOINT; status = send_cmd_to_proxies(hdr); HYDU_ERR_POP(status, "error checkpointing processes\n"); } Thanks for trying. -d On Oct 28, 2011, at 2:54 PM, Fernando Luz wrote: > Hi Darius, > > I applied the patch following your instructions and don't work. > > Definition: pmiserv_pmci.c:228 HYD_pg::nextstruct HYD_pg * nextDefinition: hydra.h:330 HYDU_SOCK_COMM_MSGWAITDefinition: hydra.h:586 HYD_event_tunsigned short HYD_event_tDefinition: hydra.h:264 HYDU_ERR_SETANDJUMP#define HYDU_ERR_SETANDJUMP(status, error,...) Definition: hydra.h:483 HYD_proxy::control_fdint control_fdDefinition: hydra.h:369 HYD_pmcd_pmi_pg_scratch::control_listen_fdint control_listen_fdDefinition: pmiserv_pmi.h:33 HYD_POLLIN#define HYD_POLLINDefinition: hydra.h:115 HYD_user_global::ifacechar * ifaceDefinition: hydra.h:398 my review here while running HPC Application nwchem parallel I got the following error message.

The output (if any) follows: [mpiexec at io4] HYD_pmcd_pmi_alloc_pg_scratch (./pm/pmiserv/pmiserv_utils.c:595): assert (pg->pg_process_count * sizeof(struct HYD_pmcd_pmi_ecount)) failed [mpiexec at io4] HYD_pmci_launch_procs (./pm/pmiserv/pmiserv_pmci.c:103): error allocating pg scratch space [mpiexec at io4] main (./ui/mpich/mpiexec.c:401): cleaning up processes\n"); status = HYD_pmcd_pmiserv_cleanup_all_pgs(); HYDU_ERR_POP(status, "cleanup of processes failed\n"); /* Force kill all bootstrap processes that we launched */ status = HYDT_bsci_wait_for_completion(0); HYDU_ERR_POP(status, "launcher returned error waiting for completion\n"); Also running mpi jobs from the cli is no problem and working.

I'll look into this further.

Did you do a make clean first? Definition: demux.c:198 HYD_user_global::debugint debugDefinition: hydra.h:402 bsci.h HYDU_ERR_POP#define HYDU_ERR_POP(status,...) Definition: hydra.h:472 HYD_pmci_launch_procsHYD_status HYD_pmci_launch_procs(void)HYD_pmci_launch_procs - Launch processes. Personal Open source Business Explore Sign up Sign in Pricing Blog Support Search GitHub This repository Watch 1 Star 0 Fork 0 adk9/hydra Code Issues 0 Pull requests 0 Projects You signed out in another tab or window.

Search: LoginPreferencesHelp/GuideAbout Trac WikiTimelineRoadmapBrowse SourceView TicketsSearch Context Navigation ← Previous TicketNext Ticket → Opened 12 months ago #2306 new bug mpiexec with 0 processes Reported by: robl Owned by: Priority: minor Definition: demux.c:169 HYD_SUCCESSDefinition: hydra.h:242 HYD_server_infostruct HYD_server_info_s HYD_server_infoDefinition: mpiexec.c:17 HYD_pmcd_pmiserv_cleanup_all_pgsHYD_status HYD_pmcd_pmiserv_cleanup_all_pgs(void)Definition: pmiserv_cb.c:134 HYDU_sock_create_and_listen_portstrHYD_status HYDU_sock_create_and_listen_portstr(char *iface, char *hostname, char *port_range, char **port_str, HYD_status(*callback)(int fd, HYD_event_t events, void *userp), void *userp)Definition: sock.c:632 HYD_cmdDefinition: hydra_server.h:13 Download in other formats: Comma-delimited Text Tab-delimited Text RSS Feed Powered by Trac 1.0 By Edgewall Software. get redirected here So I have updated the compiler and also mpich2 to the latest stable release 1.4.1p1.

Visit the Trac open source project athttp://trac.edgewall.org/ [mpich-discuss] Trouble with checkpoint Darius Buntinas buntinas at mcs.anl.gov Fri Oct 28 15:00:52 CDT 2011 Previous message: [mpich-discuss] Trouble with checkpoint Next message: [mpich-discuss] module load Nwchem-6.5 module load openmpi-1.6.4 Then the problem got solved. All test are fine. One is as Central Manager, and the others as dedicated machine.This job is work well:universe = parallelexecutable = /bin/sleeparguments = 30machine_count = 1log = logoutput = outputerror = errornotification = nevershould_transfer_files